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African swine fever virus genome mapped

21 February 2020

Researchers at 果冻影院 and the Pirbright Institute have mapped the expression of genes across the entire African swine fever virus (ASFV) genome, which has helped to establish their order of activation as well as uncovering new genes.

Pigs

The research, published in the Journal of Virology, could provide vital information for those developing vaccines and antiviral drugs to prevent the deadly pig disease caused by the virus.

ASFV causes an often lethal haemorrhagic fever in domestic pigs and wild boar. Major African swine fever outbreaks continue to spread across Eastern Europe, Asia and Africa, which in 2019 resulted in the death of nearly seven million pigs. In the absence of a vaccine or antivirals, the only way to prevent outbreaks is through biosecurity measures to prevent transmission.

鈥淥ur data shows ASFV has a complex and mammalian-like method for controlling gene expression, that uses specific promoters to enable RNA polymerase to differentiate between听which听genes it should express听when听during viral infection. Our study has also uncovered over 30 novel genes that were previously unknown,鈥 said听lead author Professor Finn Werner (果冻影院 Structural & Molecular Biology).

In their study, the researchers used next generation sequencing to analyse genes expressed by ASFV. From this they created the first complete genetic road map, which reveals the order that different sets of ASFV genes are turned on throughout its infection cycle.

Genes, including those in ASFV, are activated through a process called transcription. This is carried out by a molecular machine called RNA polymerase, which serves as 鈥榞atekeeper鈥 by ensuring that the information coded in the DNA is expressed at the correct time during infection. The RNA polymerase finds genes based on specific DNA sequences, or 鈥榩romoters鈥, that are located before a gene.

The team demonstrated that genes expressed during early infection have different promoters to those expressed later, allowing the virus to shift the pattern of activated genes according to the stage of infection. Genes used for DNA replication and immune system evasion are switched on early in the infection cycle, whereas those involved in creating proteins for the new virus particles are activated later.

鈥淎SFV has a very large DNA genome. For comparison, the influenza virus expresses eight genes, whereas ASFV expresses between 150 and 190, which has so far made it difficult for scientists to identify and determine the significance of each gene. Our study helps to untangle which genes are important during different stages of infection to better understand their functions,鈥 said听co-author Dr Linda Dixon (Pirbright Institute).

By advancing knowledge of ASFV fundamental biology, this study provides vital information that will help to progress research into desperately needed disease control methods.

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  • Source: Kansas State University on 听(CC BY 2.0)

Media contact

Chris Lane

Tel: +44 (0)207 679 9222

Email: chris.lane [at] ucl.ac.uk